Metadata-Version: 2.1
Name: pyphetools
Version: 0.9.91
Summary: Generate and work with GA4GH phenopackets
Author-email: Peter Robinson <peter.robinson@bih-charite.de>, Daniel Danis <daniel.gordon.danis@protonmail.com>
License: MIT License
        
        Copyright (c) 2023, The Monarch Initiative
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
        SOFTWARE.
Project-URL: homepage, https://github.com/monarch-initiative/pyphetools
Project-URL: repository, https://github.com/monarch-initiative/pyphetools.git
Project-URL: documentation, https://github.com/monarch-initiative/pyphetools
Project-URL: bugtracker, https://github.com/monarch-initiative/pyphetools/issues
Keywords: Global Alliance for Genomics and Health,GA4GH Phenopacket Schema,Human Phenotype Ontology,GA4GH,HPO
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: hpo-toolkit<0.6.0,>=0.5.0
Requires-Dist: matplotlib<4.0,>=3.2.0
Requires-Dist: pandas[excel]<3.0.0,>=2.0.0
Requires-Dist: phenopackets>=2.0.2
Requires-Dist: protobuf<4.0.0,>=3.15.0
Requires-Dist: requests<3.0,>=2.25.0
Requires-Dist: fasthpocr>=0.1.0
Provides-Extra: test
Requires-Dist: pytest<8.0.0,>=7.0.0; extra == "test"
Provides-Extra: docs
Requires-Dist: mkdocs-material[imaging]<10,>=9.5.10; extra == "docs"
Requires-Dist: mkdocs-material-extensions<2.0,>=1.3; extra == "docs"
Requires-Dist: mkdocstrings[python]<1.0,>=0.22; extra == "docs"
Requires-Dist: pillow; extra == "docs"
Requires-Dist: cairosvg; extra == "docs"

[![CI](https://github.com/monarch-initiative/pyphetools/workflows/CI/badge.svg)](https://github.com/monarch-initiative/pyphetools/actions/workflows/python_ci.yml)

# pyphetools
Python Phenopacket Tools

This package currently is designed to test how to use the Python version of the phenopackets package together with pandas to create phenopackets from typical supplemental tables.

Development goals include making builder code similar to the Java package to create valid phenopackets and to perform JSON Schema-based validation.


## Documentation

See the tutorial and detailed documentation [here](https://monarch-initiative.github.io/pyphetools).

## PyPI

We have made the package available in the Python Package Index (pypi) at [pyphetools](https://pypi.org/project/pyphetools/).

