Metadata-Version: 2.1
Name: ammolite
Version: 0.1.1
Summary: Visualize structure data from Biotite with PyMOL
Home-page: https://ammolite.biotite-python.org
License: BSD-3-Clause
Keywords: Bioinformatics,Computational biology,Data visualization
Author: Patrick Kunzmann
Author-email: patrick.kunzm@gmail.com
Requires-Python: >=3.6,<4.0
Classifier: Development Status :: 1 - Planning
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: biotite (>=0.21,<0.22)
Project-URL: Documentation, https://ammolite.biotite-python.org
Project-URL: Repository, https://github.com/biotite-dev/ammolite
Description-Content-Type: text/x-rst

.. image:: https://raw.githubusercontent.com/biotite-dev/biotite2pymol/master/doc/static/assets/biotite2pymol_logo_s.png
  :alt: biotite2pymol logo
  :align: center

biotite2pymol - From Biotite to PyMOL and back again
====================================================

This package enables the transfer of structure related objects
from `Biotite <https://www.biotite-python.org/>`_
to `PyMOL <https://pymol.org/>`_ for visualization,
via PyMOL's Python API:

- Import ``AtomArray`` and ``AtomArrayStack`` objects into *PyMOL* -
  without intermediate structure files.
- Convert *PyMOL* objects into ``AtomArray`` and ``AtomArrayStack`` instances.
- Use *Biotite*'s boolean masks for atom selection in *PyMOL*.

Have a look at the `example Jupyter notebook <https://github.com/biotite-dev/biotite2pymol/blob/master/doc/examples/cytochrome.ipynb>`_.

|

.. image:: https://raw.githubusercontent.com/biotite-dev/biotite2pymol/master/doc/demo/demo.gif
    :alt: biotite2pymol demo

|

*PyMOL is a trademark of Schrodinger, LLC.*
