LICENSE
MANIFEST.in
README.md
droptables.py
master-test.sh
requirements.txt
setup.py
geminicassandra/GeminiQuery.py
geminicassandra/__init__.py
geminicassandra/anno_info.py
geminicassandra/annotations.py
geminicassandra/compression.py
geminicassandra/config.py
geminicassandra/database_cassandra.py
geminicassandra/dgidb.py
geminicassandra/func_impact.py
geminicassandra/gemini_amend.py
geminicassandra/gemini_annotate.py
geminicassandra/gemini_browser.py
geminicassandra/gemini_constants.py
geminicassandra/gemini_dbinfo.py
geminicassandra/gemini_load.py
geminicassandra/gemini_load_chunk.py
geminicassandra/gemini_main.py
geminicassandra/gemini_plot.py
geminicassandra/gemini_query.py
geminicassandra/gemini_region.py
geminicassandra/gemini_stats.py
geminicassandra/gemini_subjects.py
geminicassandra/gemini_update.py
geminicassandra/gemini_utils.py
geminicassandra/gene_table.py
geminicassandra/infotag.py
geminicassandra/install-data.py
geminicassandra/ped.py
geminicassandra/popgen.py
geminicassandra/query_expressions.py
geminicassandra/severe_impact.py
geminicassandra/snpEff.py
geminicassandra/sql.py
geminicassandra/sql_extended.py
geminicassandra/sql_utils.py
geminicassandra/stats.py
geminicassandra/structural_variants.py
geminicassandra/table_schemes.py
geminicassandra/vep.py
geminicassandra/version.py
geminicassandra.egg-info/PKG-INFO
geminicassandra.egg-info/SOURCES.txt
geminicassandra.egg-info/dependency_links.txt
geminicassandra.egg-info/not-zip-safe
geminicassandra.egg-info/requires.txt
geminicassandra.egg-info/top_level.txt
geminicassandra/data/__init__.py
geminicassandra/scripts/__init__.py
geminicassandra/scripts/gemini_install.py
geminicassandra/scripts/geminicassandra
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.snpEff.vcf
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.vcf
test/cassandra-test-query.sh
test/cassandra-test-setup.sh
test/data-setup.sh
test/querylog
test/test-clinvar.sh
test/test-columns.sh
test/test-exac.sh
test/test-genome.sh
test/test-genotypes.sh
test/test-load.sh
test/test-query-multicore.sh
test/test-query.sh
test/test-wildcards-multicore.sh
test/test-wildcards.sh
test/test.auto_dom.no_parents.2.ped
test/test.auto_dom.no_parents.2.vcf
test/test.auto_dom.no_parents.3.ped
test/test.auto_dom.no_parents.3.vcf
test/test.auto_dom.no_parents.4.ped
test/test.auto_dom.no_parents.4.vcf
test/test.auto_dom.no_parents.5.ped
test/test.auto_dom.no_parents.5.vcf
test/test.auto_dom.no_parents.ped
test/test.auto_dom.no_parents.vcf
test/test.auto_dom.ped
test/test.auto_dom.vcf
test/test.auto_rec.no_parents.2.ped
test/test.auto_rec.no_parents.2.vcf
test/test.auto_rec.no_parents.3.ped
test/test.auto_rec.no_parents.3.vcf
test/test.auto_rec.no_parents.4.ped
test/test.auto_rec.no_parents.4.vcf
test/test.auto_rec.no_parents.5.ped
test/test.auto_rec.no_parents.5.vcf
test/test.auto_rec.no_parents.ped
test/test.auto_rec.no_parents.vcf
test/test.auto_rec.ped
test/test.auto_rec.vcf
test/test.burden.ped
test/test.burden.vcf
test/test.cadd.vcf
test/test.clinvar.vcf
test/test.comp_het.2.vcf
test/test.comp_het.3.vcf
test/test.comp_het.ped
test/test.comp_het.vcf
test/test.cosmic.vcf
test/test.de_novo.affected.and.unaffected.ped
test/test.de_novo.affected.and.unaffected.vcf
test/test.de_novo.ped
test/test.de_novo.vcf
test/test.exac.vcf
test/test.exac.vcf.gz
test/test.exac.vcf.gz.gbi
test/test.family.vcf
test/test.fusions.ped
test/test.fusions.vcf
test/test.passonly.vcf
test/test.query.vcf
test/test.query.vcf.gz
test/test.query.vcf.gz.gbi
test/test.region.vep.vcf
test/test.roh.vcf
test/test.snpeff.vcf
test/test.snpeff.vcf.gz
test/test.snpeff.vcf.gz.gbi
test/test.somatic.ped
test/test.somatic.vcf
test/test.vcf_id.snpeff.vcf
test/test.vcf_id.snpeff.vcf.gz
test/test.vcf_id.snpeff.vcf.gz.gbi
test/test1.snpeff.vcf
test/test2.snpeff.vcf
test/test2.snpeff.vcf.gz
test/test2.snpeff.vcf.gz.gbi
test/test3.snpeff.vcf
test/test3.snpeff.vcf.gz
test/test3.snpeff.vcf.gz.gbi
test/test4.snpeff.ped
test/test4.vep.snpeff.vcf
test/test4.vep.snpeff.vcf.gz
test/test4.vep.snpeff.vcf.gz.gbi
test/test5.vep.snpeff.vcf
test/test_amend_sample.ped
test/test_extended_ped.ped
test/loading_logs/11022.csv
test/loading_logs/11022.err
test/loading_logs/11092.csv
test/loading_logs/11092.err
test/loading_logs/11130.csv
test/loading_logs/11130.err
test/loading_logs/11183.csv
test/loading_logs/11183.err
test/loading_logs/12585.csv
test/loading_logs/12585.err
test/loading_logs/12655.csv
test/loading_logs/12655.err
test/loading_logs/12693.csv
test/loading_logs/12693.err
test/loading_logs/12738.csv
test/loading_logs/12738.err
test/loading_logs/13354.csv
test/loading_logs/13354.err
test/loading_logs/13424.csv
test/loading_logs/13424.err
test/loading_logs/13463.csv
test/loading_logs/13463.err
test/loading_logs/13500.csv
test/loading_logs/13500.err
test/loading_logs/14956.csv
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test/loading_logs/15026.csv
test/loading_logs/15026.err
test/loading_logs/15064.csv
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test/loading_logs/15117.csv
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test/loading_logs/18550.csv
test/loading_logs/18550.err
test/loading_logs/18620.csv
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test/loading_logs/18658.csv
test/loading_logs/18658.err
test/loading_logs/18703.csv
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test/loading_logs/18934.csv
test/loading_logs/18934.err
test/loading_logs/19014.csv
test/loading_logs/19014.err
test/loading_logs/19096.csv
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test/loading_logs/19158.csv
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test/loading_logs/24307.csv
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test/loading_logs/24377.csv
test/loading_logs/24377.err
test/loading_logs/24402.csv
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test/loading_logs/24415.csv
test/loading_logs/24415.err
test/loading_logs/24462.csv
test/loading_logs/24462.err
test/loading_logs/24472.csv
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test/loading_logs/24510.csv
test/loading_logs/24510.err
test/loading_logs/24563.csv
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test/loading_logs/27991.csv
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test/loading_logs/28061.csv
test/loading_logs/28061.err
test/loading_logs/28100.csv
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test/loading_logs/28145.csv
test/loading_logs/28145.err
test/loading_logs/31915.csv
test/loading_logs/31915.err
test/loading_logs/3625.csv
test/loading_logs/3625.err
test/loading_logs/3628.csv
test/loading_logs/3628.err
test/loading_logs/3631.csv
test/loading_logs/3631.err
test/loading_logs/3776.csv
test/loading_logs/3776.err
test/loading_logs/3779.csv
test/loading_logs/3779.err
test/loading_logs/3782.csv
test/loading_logs/3782.err
test/loading_logs/3851.csv
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test/loading_logs/3854.csv
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test/loading_logs/3857.csv
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test/loading_logs/3986.csv
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test/loading_logs/3989.csv
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test/loading_logs/3992.csv
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test/loading_logs/4062.csv
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test/loading_logs/4065.csv
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test/loading_logs/4068.csv
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test/loading_logs/4138.csv
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test/loading_logs/4141.csv
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test/loading_logs/4144.csv
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test/loading_logs/4216.csv
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test/loading_logs/4219.csv
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test/loading_logs/4222.csv
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test/loading_logs/4268.csv
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test/loading_logs/4289.csv
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test/loading_logs/4354.csv
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test/loading_logs/4357.csv
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test/loading_logs/4360.csv
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test/loading_logs/4406.csv
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test/loading_logs/4928.csv
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test/loading_logs/4999.csv
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test/loading_logs/5039.csv
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test/loading_logs/5091.csv
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test/loading_logs/8714.csv
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test/loading_logs/8784.csv
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test/loading_logs/8822.csv
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test/loading_logs/8877.csv
test/loading_logs/8877.err