Metadata-Version: 1.1
Name: banana
Version: 0.3.1
Summary: Biomedical ANAlysis iN Arcana (Banana): biomedical analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
Home-page: https://github.com/MonashBI/banana
Author: Tom G. Close
Author-email: tom.g.close@gmail.com
License: The Apache Software Licence 2.0
Description: Banana
        ======
        
        .. image:: https://img.shields.io/pypi/pyversions/banana.svg
          :target: https://pypi.python.org/pypi/banana/
          :alt: Supported Python versions
        .. image:: https://img.shields.io/pypi/v/banana.svg
          :target: https://pypi.python.org/pypi/banana/
          :alt: Latest Version    
        .. image:: https://readthedocs.org/projects/banana/badge/?version=latest
          :target: http://banana.readthedocs.io/en/latest/?badge=latest
          :alt: Documentation Status
        
        
        Biomedical imaging ANAlysis iN Arcana (Banana): a collection of biomedical analysis
        workflows implemented in the Arcana_ framework, which can be used to analyse
        study datasets stored in XNAT, BIDS or plain-directory repositories.
        
        Dependencies
        -----------------
        
        Core
        ~~~~
        
        * arcana
        * nibabel
        * pydicom
        
        All of these are available on PyPI and can be installed with::
        
            $ pip3 install banana
        
        
        Pipelines
        ~~~~~~~~~
        
        Depending on which pipelines you need to run, you may need to install some or
        all of the following tools. Note that MRtrix3 and Dcm2niix are used for implicit
        format conversions so are typically required.
        
        * MRtrix3 (https://github.com/MRtrix3/mrtrix3)
        * Dcm2niix (https://github.com/rordenlab/dcm2niix)
        * FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/)
        * Matlab (https://au.mathworks.com/products/matlab.html)
        * SPM (http://www.fil.ion.ucl.ac.uk/spm/software/spm12/)
        * ANTs (https://sourceforge.net/projects/advants/)
        * Freesurfer (https://surfer.nmr.mgh.harvard.edu)
        * AFNI (https://afni.nimh.nih.gov)
        
        .. _Arcana: http://arcana.readthedocs.io
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
