[console_scripts]
bam-to-wiggle = lifesci.bio_programs.bam_to_wiggle:main
bed12-to-gtf = lifesci.bio_programs.bed12_to_gtf:main
bedx-to-bedy = lifesci.bio_programs.bedx_to_bedy:main
calculate-bed-overlap = lifesci.bio_programs.calculate_bed_overlap:main
convert-ccds-to-bed = lifesci.bio_programs.convert_ccds_to_bed:main
count-aligned-reads = lifesci.bio_programs.count_aligned_reads:main
count-reads = lifesci.bio_programs.count_reads:main
create-aligned-read-count-bar-chart = lifesci.bio_programs.plotting.create_aligned_read_count_bar_chart:main
create-mygene-report = lifesci.bio_programs.create_mygene_report:main
dna-to-aa = lifesci.bio_programs.dna_to_aa:main
download-srr-files = lifesci.bio_programs.download_srr_files:main
extract-bed-sequences = lifesci.bio_programs.extract_bed_sequences:main
extract-cds-coordinates = lifesci.bio_programs.extract_cds_coordinates:main
fasta-to-fastq = lifesci.bio_programs.fasta_to_fastq:main
fastq-pe-dedupe = lifesci.bio_programs.fastq_pe_dedupe:main
filter-bam-by-ids = lifesci.bio_programs.filter_bam_by_ids:main
fix-all-bed-files = lifesci.bio_programs.fix_all_bed_files:main
get-all-utrs = lifesci.bio_programs.get_all_utrs:main
get-read-length-distribution = lifesci.bio_programs.get_read_length_distribution:main
gtf-to-bed12 = lifesci.bio_programs.gtf_to_bed12:main
join-long-chromosomes = lifesci.bio_programs.join_long_chromosomes:main
merge-isoforms = lifesci.bio_programs.merge_isoforms:main
parse-meme-names = lifesci.bio_programs.parse_meme_names:main
plot-read-length-distribution = lifesci.bio_programs.plotting.plot_read_length_distribution:main
remove-duplicate-bed-entries = lifesci.bio_programs.remove_duplicate_bed_entries:main
remove-duplicate-sequences = lifesci.bio_programs.remove_duplicate_sequences:main
remove-multimapping-reads = lifesci.bio_programs.remove_multimapping_reads:main
reorder-fasta = lifesci.bio_programs.reorder_fasta:main
run-bowtie = lifesci.bio_programs.run_bowtie:main
split-bed12-blocks = lifesci.bio_programs.split_bed12_blocks:main
split-long-chromosomes = lifesci.bio_programs.split_long_chromosomes:main
subtract-bed = lifesci.bio_programs.subtract_bed:main

