Metadata-Version: 1.0
Name: bbcu.bioutils
Version: 1.0.6
Summary: Common code shared among in-house Bioinformatics python packages
Home-page: UNKNOWN
Author: UNKNOWN
Author-email: UNKNOWN
License: UNKNOWN
Description: Desctiption
        -----------
        
        Common code shared among in-house Bioinformatics python packages, such as:
        
        - Parsing of FastQC output
        - Manipulating FASTA sequences
        - Building and using database of conversion GeneBank id (gi) to scientific name
        
        Python version
        --------------
        
        This project is currently using Python 2.7
        
        Installation
        ------------
        
        It is recommended to use **virtualenv** to create a clean python environment.
        
        To install bioutils, use **pip**:
        
            pip install bbcu.bioutils
        
        Testing
        -------
        To run unit tests, use:
        
            nosetests
        
        Or:
        
            tox
        
        This suite includes both unit and more time-consuming integration tests
        
        
        Execution
        ---------
        
        The main script shipped with this project is **gi2name.py**, see its options by running:
        
        The database is built by the script: **build-taxonomy-db.py**
        
        
Platform: UNKNOWN
