Metadata-Version: 2.1
Name: flight-genome
Version: 1.2.1
Summary: flight - metagenomic binner and variant clusterer.
Home-page: https://github.com/rhysnewell/flight
Author: Rhys Newell
Author-email: rhys.newell@hdr.qut.edu.au
License: GPL-3.0
Description: # Flight
        The python component used by [Lorikeet](https:/github.com/rhysnewell/Lorikeet) and [Rosella](https:/github.com/rhysnewell/rosella)
        It can be used as a standalone binning algorithm for MAGs, but will not include contig SNP information
        which is collected by Rosella.
        # Installation
        This module is only used in conjunction with other programs, but if you wish to install and play around with the code 
        follow these instructions:
        
        ```
        git clone https://github.com/rhysnewell/flight.git
        cd flight
        conda env create -n flight -f flight.yml
        conda activate flight
        pip install .
        flight bin --help
        ```
        
        # Requirements
        
        Initial requirements for flight can be downloaded using the `flight.yml`:
        ```
        conda env create -n flight -f flight.yml
        ```
        
        # Usage
        
        To perform mag recovery:
        ```
        flight bin --assembly scaffolds.fasta --input coverm.cov --output output_dir/ --threads 24
        ```
        
Platform: UNKNOWN
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
