Metadata-Version: 2.1
Name: hydra-genetics
Version: 0.0.6
Summary: Helper tools for use with hydra-genetics pipelines.
Home-page: https://github.com/hydra-genetics/tools
Author: Patrik Smeds
Author-email: patrik.smeds@scilifelab.uu.se
License: GPL-3
Keywords: hydra-genetics,snakemake,bioinformatics,workflow,pipeline,clinical,biology,sequencing,NGS,next generation sequencing
Platform: UNKNOWN
Description-Content-Type: text/markdown
License-File: LICENSE.md


# Tools

Python tool with helper functions for setting up new pipeline and preparing reference data

[![Lint and Test](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml/badge.svg?branch=master)](https://github.com/hydra-genetics/tools/actions/workflows/main.yaml)

![python](https://img.shields.io/badge/python-3.8-blue)

## Functions

* create
* reference


Example of how to generate a new project
```
 virtualenv -p python3.9 venv
 source venv/bin/activate
 pip install hydra-genetics
 hydra-genetics create-module -n snv -d "Collection of callers" -a "Patrik S" -e "p.s@mail.se" -g patrik -o snv
 hydra-genetics create-rule -n rule2 -m snv -a test2 -e "test@test"
```


