Metadata-Version: 2.1
Name: oncoboxlib
Version: 1.0.0
Summary: Oncobox collections of libraries
Home-page: https://gitlab.com/oncobox/oncoboxlib
Author: Alexander Simonov <registsys@mail.ru>, Victor Tkachev <victor.tkachev@yandex.com>
Author-email: tkachev@oncobox.com
License: LICENSE.txt
Description: # oncoboxlib
        
        Oncobox Library which calculates scores.
        
        ## Installation
        
        ```
        pip install oncoboxlib
        ```
        
        ## How to run the example
        
        1. Create any directory that will be used a sandbox. Let's assume it is named `sandbox`.
        
        
        2. Extract `resources/databases.zip` into `sandbox/databases/`.
          <br> (You may download it from 
          `https://gitlab.com/oncobox/oncoboxlib/-/blob/master/resources/databases.zip`)
          
        
        3. Extract example data `resources/cyramza_normalized_counts.txt.zip` into `sandbox`.
          <br> (You may download it from 
          `https://gitlab.com/oncobox/oncoboxlib/-/blob/master/resources/cyramza_normalized_counts.txt.zip`)
          
        
        What it looks like now:
        ```
           - sandbox
               - databases
                   - Balanced 1.123
                   - KEGG Adjusted 1.123
                   ...
               - cyramza_normalized_counts.txt  
        ```
        
        4. Change directory to `sandbox` and execute the command:
        ```
        calculate_scores --databases-path=databases/ --samples-file=cyramza_normalized_counts.txt
        ```
        It will create a result file `sandbox\pal.csv`.
        
        
        Alternatively, you can use it as a library in your source code.
        For details lease see `examples` directory.
        
Keywords: bioinformatics,transcriptomics,signaling pathway
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
