README.md
setup.py
cg_fluffy.egg-info/PKG-INFO
cg_fluffy.egg-info/SOURCES.txt
cg_fluffy.egg-info/dependency_links.txt
cg_fluffy.egg-info/entry_points.txt
cg_fluffy.egg-info/requires.txt
cg_fluffy.egg-info/top_level.txt
fluffy/__init__.py
fluffy/__main__.py
fluffy/config.py
fluffy/deliverables.py
fluffy/samplesheet.py
fluffy/singularity_cmd.py
fluffy/slurm_api.py
fluffy/status.py
fluffy/version.py
fluffy/cli/__init__.py
fluffy/cli/base.py
fluffy/cli/make_analysis.py
fluffy/cli/make_reference.py
fluffy/cli/make_rerun.py
fluffy/commands/__init__.py
fluffy/commands/amycne.py
fluffy/commands/bwa.py
fluffy/commands/multiqc.py
fluffy/commands/picard.py
fluffy/commands/pipelines.py
fluffy/commands/preface.py
fluffy/commands/tiddit.py
fluffy/commands/utils.py
fluffy/commands/wisecondor.py
fluffy/workflows/__init__.py
fluffy/workflows/align.py
fluffy/workflows/amycne.py
fluffy/workflows/analyse_samples.py
fluffy/workflows/cleanup.py
fluffy/workflows/picard.py
fluffy/workflows/preface.py
fluffy/workflows/status_update.py
fluffy/workflows/summarize.py
fluffy/workflows/wisecondor.py