LICENSE
MANIFEST.in
README.md
droptables.py
master-test.sh
master_test_cassandra.sh
requirements.txt
setup.py
time-wildcards.sh
update_load.sh
update_query.sh
docs/EXAMPLES.rst
docs/Makefile
docs/TODO.rst
docs/build.sh
docs/conf.py
docs/gemini.ai
docs/gemini.png
docs/index.rst
docs/_static/labibi.css
docs/_static/labibi.js
docs/content/acknowledgements.rst
docs/content/api.rst
docs/content/browser.rst
docs/content/caveats.rst
docs/content/database_schema.rst
docs/content/faq.rst
docs/content/functional_annotation.rst
docs/content/history.rst
docs/content/installation.rst
docs/content/loading.rst
docs/content/other.rst
docs/content/querying.rst
docs/content/quick_start.rst
docs/content/tools.rst
docs/images/browser-query.png
docs/images/overview.png
docs/templates/layout.html
docs/templates/page.html
docs/templates/sidebar-intro.html
docs/themes/rtd/theme.conf
docs/themes/rtd/static/rtd.css_t
geminicassandra/GeminiQuery.py
geminicassandra/__init__.py
geminicassandra/anno_info.py
geminicassandra/annotations.py
geminicassandra/compression.py
geminicassandra/config.py
geminicassandra/database_cassandra.py
geminicassandra/dgidb.py
geminicassandra/func_impact.py
geminicassandra/gemini_amend.py
geminicassandra/gemini_annotate.py
geminicassandra/gemini_browser.py
geminicassandra/gemini_constants.py
geminicassandra/gemini_dbinfo.py
geminicassandra/gemini_load.py
geminicassandra/gemini_load_chunk.py
geminicassandra/gemini_main.py
geminicassandra/gemini_plot.py
geminicassandra/gemini_query.py
geminicassandra/gemini_region.py
geminicassandra/gemini_stats.py
geminicassandra/gemini_subjects.py
geminicassandra/gemini_update.py
geminicassandra/gemini_utils.py
geminicassandra/gene_table.py
geminicassandra/infotag.py
geminicassandra/install-data.py
geminicassandra/ped.py
geminicassandra/popgen.py
geminicassandra/query_expressions.py
geminicassandra/severe_impact.py
geminicassandra/snpEff.py
geminicassandra/sql.py
geminicassandra/sql_extended.py
geminicassandra/sql_utils.py
geminicassandra/stats.py
geminicassandra/structural_variants.py
geminicassandra/table_schemes.py
geminicassandra/vep.py
geminicassandra/version.py
geminicassandra.egg-info/PKG-INFO
geminicassandra.egg-info/SOURCES.txt
geminicassandra.egg-info/dependency_links.txt
geminicassandra.egg-info/not-zip-safe
geminicassandra.egg-info/requires.txt
geminicassandra.egg-info/top_level.txt
geminicassandra/data/__init__.py
geminicassandra/scripts/__init__.py
geminicassandra/scripts/gemini_install.py
geminicassandra/scripts/geminicassandra
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.snpEff.vcf
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.vcf
test/cassandra-test-query.sh
test/cassandra-test-setup.sh
test/data-setup.sh
test/test-amend.sh
test/test-annotate-tool.sh
test/test-auto-dom.sh
test/test-auto-rec.sh
test/test-burden.sh
test/test-cadd.sh
test/test-clinvar.sh
test/test-columns.sh
test/test-comphet.sh
test/test-cosmic.sh
test/test-de-novo.sh
test/test-dump.sh
test/test-effstring.sh
test/test-encode.sh
test/test-exac.sh
test/test-fusions.sh
test/test-genome.sh
test/test-genotypes.sh
test/test-gerp.sh
test/test-interactions.sh
test/test-load.sh
test/test-lofsieve.sh
test/test-map.sh
test/test-pathtool.sh
test/test-pfam.sh
test/test-pop.sh
test/test-query-multicore.sh
test/test-query.sh
test/test-region.sh
test/test-roh.sh
test/test-somatic.sh
test/test-stats.sh
test/test-wildcards-multicore.sh
test/test-wildcards.sh
test/test-windower.sh
test/test.auto_dom.no_parents.2.ped
test/test.auto_dom.no_parents.2.vcf
test/test.auto_dom.no_parents.3.ped
test/test.auto_dom.no_parents.3.vcf
test/test.auto_dom.no_parents.4.ped
test/test.auto_dom.no_parents.4.vcf
test/test.auto_dom.no_parents.5.ped
test/test.auto_dom.no_parents.5.vcf
test/test.auto_dom.no_parents.ped
test/test.auto_dom.no_parents.vcf
test/test.auto_dom.ped
test/test.auto_dom.vcf
test/test.auto_rec.no_parents.2.ped
test/test.auto_rec.no_parents.2.vcf
test/test.auto_rec.no_parents.3.ped
test/test.auto_rec.no_parents.3.vcf
test/test.auto_rec.no_parents.4.ped
test/test.auto_rec.no_parents.4.vcf
test/test.auto_rec.no_parents.5.ped
test/test.auto_rec.no_parents.5.vcf
test/test.auto_rec.no_parents.ped
test/test.auto_rec.no_parents.vcf
test/test.auto_rec.ped
test/test.auto_rec.vcf
test/test.burden.ped
test/test.burden.vcf
test/test.cadd.vcf
test/test.clinvar.vcf
test/test.comp_het.2.vcf
test/test.comp_het.3.vcf
test/test.comp_het.ped
test/test.comp_het.vcf
test/test.cosmic.vcf
test/test.de_novo.affected.and.unaffected.ped
test/test.de_novo.affected.and.unaffected.vcf
test/test.de_novo.ped
test/test.de_novo.vcf
test/test.exac.vcf
test/test.exac.vcf.gz
test/test.exac.vcf.gz.gbi
test/test.family.vcf
test/test.fusions.ped
test/test.fusions.vcf
test/test.passonly.vcf
test/test.query.vcf
test/test.query.vcf.gz
test/test.query.vcf.gz.gbi
test/test.region.vep.vcf
test/test.roh.vcf
test/test.snpeff.vcf
test/test.snpeff.vcf.gz
test/test.snpeff.vcf.gz.gbi
test/test.somatic.ped
test/test.somatic.vcf
test/test.vcf_id.snpeff.vcf
test/test.vcf_id.snpeff.vcf.gz
test/test.vcf_id.snpeff.vcf.gz.gbi
test/test1.snpeff.vcf
test/test2.snpeff.vcf
test/test2.snpeff.vcf.gz
test/test2.snpeff.vcf.gz.gbi
test/test3.snpeff.vcf
test/test3.snpeff.vcf.gz
test/test3.snpeff.vcf.gz.gbi
test/test4.snpeff.ped
test/test4.vep.snpeff.vcf
test/test4.vep.snpeff.vcf.gz
test/test4.vep.snpeff.vcf.gz.gbi
test/test5.vep.snpeff.vcf
test/test_amend_sample.ped
test/test_extended_ped.ped