README.md
setup.py
rnaindel/__init__.py
rnaindel/rnaindel.py
rnaindel/version.py
rnaindel.egg-info/PKG-INFO
rnaindel.egg-info/SOURCES.txt
rnaindel.egg-info/dependency_links.txt
rnaindel.egg-info/entry_points.txt
rnaindel.egg-info/requires.txt
rnaindel.egg-info/top_level.txt
rnaindel/analysis/__init__.py
rnaindel/analysis/alignment_feature_calculator.py
rnaindel/analysis/analyzer.py
rnaindel/analysis/callset_formatter.py
rnaindel/analysis/classifier.py
rnaindel/analysis/coding_indel.py
rnaindel/analysis/database_feature_calculator.py
rnaindel/analysis/outlier.py
rnaindel/analysis/postprocessor.py
rnaindel/analysis/preprocessor.py
rnaindel/analysis/sequence_properties.py
rnaindel/analysis/transcript_feature_calculator.py
rnaindel/analysis/utils.py
rnaindel/analysis/vcf_writer.py
rnaindel/defaultcaller/__init__.py
rnaindel/defaultcaller/bambino-1.0.jar
rnaindel/defaultcaller/defaultcaller.py
rnaindel/defaultcaller/mysql-connector-java-5.1.10.jar
rnaindel/defaultcaller/picard.jar
rnaindel/defaultcaller/third_party.jar
rnaindel/occurrence/__init__.py
rnaindel/occurrence/counter.py
rnaindel/training/__init__.py
rnaindel/training/downsampler.py
rnaindel/training/feature_selector.py
rnaindel/training/homopolyer_trainer.py
rnaindel/training/model_selection.py
rnaindel/training/model_updater.py
rnaindel/training/parameter_tuner.py
rnaindel/training/result_reporter.py
rnaindel/training/trainer.py