LICENSE.md
MANIFEST.in
README.rst
requirements.txt
setup.py
version.yml
molecular/__init__.py
molecular/constants.py
molecular/errors.py
molecular/flags.py
molecular/test.py
molecular/version.py
molecular.egg-info/PKG-INFO
molecular.egg-info/SOURCES.txt
molecular.egg-info/dependency_links.txt
molecular.egg-info/requires.txt
molecular.egg-info/top_level.txt
molecular.egg-info/zip-safe
molecular/_include/query_macros.yml
molecular/_include/protein/relative_sasa.yml
molecular/analysis/__init__.py
molecular/analysis/_analysis_utils.c
molecular/analysis/_analysis_utils.pyx
molecular/analysis/bonds.py
molecular/analysis/cluster.py
molecular/analysis/contacts.y.py
molecular/analysis/coordnum.py
molecular/analysis/density.py
molecular/analysis/distance.py
molecular/analysis/histogram.py
molecular/analysis/order.py
molecular/analysis/rmsd.py
molecular/analysis/sanity.py
molecular/analysis/setup_analysis.py
molecular/analysis/protein/__init__.py
molecular/analysis/protein/backbone_dihedrals.py
molecular/analysis/protein/hydrophobicity.py
molecular/analysis/protein/r1N.py
molecular/analysis/protein/sasa.py
molecular/analysis/protein/secondary_structure.py
molecular/analysis/protein/sequence.py
molecular/analysis/protein/stride_port.py
molecular/bioinformatics/__init__.py
molecular/bioinformatics/ideas.py
molecular/bioinformatics/sequence.py
molecular/core/__init__.py
molecular/core/errata.py
molecular/core/quantity.py
molecular/core/structure.py
molecular/core/trajectory-circe.py
molecular/core/trajectory.py
molecular/core/weighted_histogram.py
molecular/energy/__init__.py
molecular/energy/energy.py
molecular/external/__init__-circe.py
molecular/external/__init__.py
molecular/external/namd.py
molecular/external/rcsb-circe.py
molecular/external/rcsb.py
molecular/external/stride.py
molecular/external/vmd.py
molecular/fep/__init__.py
molecular/fep/fep.py
molecular/geometry/__init__.py
molecular/geometry/geometry.py
molecular/geometry/shapes.py
molecular/io/__init__.py
molecular/io/_read_dcd.c
molecular/io/_read_dcd.pyx
molecular/io/errata.py
molecular/io/read.py
molecular/io/read_general.py
molecular/io/read_psf.py
molecular/io/rtf.py
molecular/io/utilities.py
molecular/io/fortran/read_dcd.f90
molecular/io/fortran/read_dcd.pyf
molecular/io/fortran/read_dcd_header.f90
molecular/misc/__init__.py
molecular/misc/misc.py
molecular/simulations/__init__.py
molecular/simulations/compartment.py
molecular/simulations/go.py
molecular/simulations/ising.py
molecular/simulations/lattice.py
molecular/simulations/replica_exchange.py
molecular/simulations/simple.py
molecular/statistics/__init__.py
molecular/statistics/block.py
molecular/statistics/statistics.py
molecular/statistics/time_series.py
molecular/transform/__init__.py
molecular/transform/transform.py
molecular/viz/__init__.py
molecular/viz/plots.py