Metadata-Version: 2.1
Name: varBscore
Version: 1.0.1
Summary: A python package to calculate varBscore using vcf input
Home-page: https://github.com/bioShaun/omSnpScore
Author: lx Gui
Author-email: guilixuan@gmail.com
License: MIT
Description: varBscore: calculate varBscore using vcf input
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        Usage
        -----------
        
        basic usage
        
            $ snpScore-mp2 \
                -p '{"mutant":["mutan"],"wild":["wild"],"mutant_parent":[],"wild_parent":[],"background":[],"qtlseqr_window":1000000,"qtlseqr":"qtlseqr","ed":"ed","min_depth":5,"snp_number_window":20,"snp_number_step":5,"ref_freq":0.3,"p_ref_freq":0.3,"background_ref_freq":0.3,"qtlseqr_min_depth":5,"qtlseqr_ref_freq":0.3,"pop_stru":"RIL","snp_density_window":100000,"snp_density_step":100000}' \
                --vcf_dir vcf.dir1 \
                --vcf_dir vcf.dir2 \
                --chr_size chr.size \
                --thread 4 \
                --plant \
                -o out.dir \
                --snpeff_db snpeff.db.name \
                --snpeff_cfg snpeff.config.path
Keywords: bioinformatics,NGS,Reseq,SNP
Platform: UNKNOWN
Description-Content-Type: text/markdown
