LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
besca/__init__.py
besca/_helper.py
besca/_logging.py
besca/_notebook.py
besca/_version.py
besca.egg-info/PKG-INFO
besca.egg-info/SOURCES.txt
besca.egg-info/dependency_links.txt
besca.egg-info/not-zip-safe
besca.egg-info/requires.txt
besca.egg-info/top_level.txt
besca/Import/__init__.py
besca/Import/_labelings.py
besca/Import/_read.py
besca/datasets/__init__.py
besca/datasets/_datasets.py
besca/datasets/_helper.py
besca/datasets/_mito.py
besca/datasets/data/__init__.py
besca/datasets/genesets/CellNames_scseqCMs6_Extrasigs.gmt
besca/datasets/genesets/CellNames_scseqCMs6_Extrasigs.mouse.gmt
besca/datasets/genesets/CellNames_scseqCMs6_config.mouse.tsv
besca/datasets/genesets/CellNames_scseqCMs6_config.tsv
besca/datasets/genesets/CellNames_scseqCMs6_sigs.gmt
besca/datasets/genesets/CellNames_scseqCMs6_sigs.mouse.gmt
besca/datasets/genesets/CryptScoreParikh2019.gmt
besca/datasets/genesets/HumanCD45p_scseqCMs6.gmt
besca/datasets/genesets/Immune.gmt
besca/datasets/genesets/__init__.py
besca/datasets/homologs/MGItoHGNC.tsv
besca/datasets/homologs/__init__.py
besca/datasets/mito_files/__init__.py
besca/datasets/mito_files/cyno.mito.tsv
besca/datasets/mito_files/cynomolgus.mito.tsv
besca/datasets/mito_files/human.mito.tsv
besca/datasets/mito_files/human.ribosomal.tsv
besca/datasets/mito_files/mouse.mito.tsv
besca/datasets/mito_files/pig.mito.tsv
besca/datasets/mito_files/rat.mito.tsv
besca/datasets/mito_files/test.mito.tsv
besca/datasets/nomenclature/CellTypes_v1.tsv
besca/datasets/nomenclature/__init__.py
besca/export/__init__.py
besca/export/_export.py
besca/pl/__init__.py
besca/pl/_celltype_quantification.py
besca/pl/_dot_heatmap.py
besca/pl/_filter_threshold_plots.py
besca/pl/_general.py
besca/pl/_nomenclature_network.py
besca/pl/_qc_plots.py
besca/pl/_riverplot.py
besca/pl/_split_gene_expression.py
besca/pl/_update_palette.py
besca/pp/__init__.py
besca/pp/_filtering.py
besca/pp/_fraction_counts.py
besca/pp/_fraction_pos.py
besca/pp/_normalization.py
besca/pp/_wrapper_Rfuncs.py
besca/st/_FAIR_export.py
besca/st/__init__.py
besca/st/_qc_report.py
besca/st/_setup_funcs.py
besca/st/_wrapper_Rfuncs.py
besca/st/_wrapper_funcs.py
besca/st/style.css
besca/tl/__init__.py
besca/tl/_annot_compare.py
besca/tl/_annotate_cellnames.py
besca/tl/_count_occurrences.py
besca/tl/auto_annot/__init__.py
besca/tl/auto_annot/_auto_annot.py
besca/tl/bcor/__init__.py
besca/tl/bcor/_mnnpy_batchcorrection.py
besca/tl/dge/__init__.py
besca/tl/dge/_dge.py
besca/tl/rc/__init__.py
besca/tl/rc/_reclustering.py
besca/tl/sig/__init__.py
besca/tl/sig/_annot.py
besca/tl/sig/_gems_link.py
besca/tl/sig/_helper.py
besca/tl/sig/_io_sig.py
besca/tl/sig/_metrics.py
besca/tl/sig/_sig.py
besca/tl/sig/_silhouette.py