Metadata-Version: 2.1
Name: biosniff
Version: 0.2.0
Summary: A sniffer for biological data formats
Home-page: http://pypi.python.org/pypi/biosniff
Author: The bioconvert Contributors
Author-email: thomas.cokelaer@pasteur.fr
Maintainer: Thomas Cokelaer
Maintainer-email: thomas.cokelaer@pasteur.fr
License: BSD
Download-URL: http://pypi.python.org/pypi/biosniff
Description: BioSniff
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        .. image:: https://badge.fury.io/py/biosniff.svg
            :target: https://pypi.python.org/pypi/biosniff
        
        .. image:: https://github.com/cokelaer/biosniff/actions/workflows/main.yml/badge.svg?branch=main
            :target: https://github.com/cokelaer/biosniff/actions/workflows/main.yml
        
        
            
        .. image:: https://coveralls.io/repos/github/cokelaer/biosniff/badge.svg?branch=main
            :target: https://coveralls.io/github/cokelaer/biosniff?branch=main
        
        
        
        :Python version: 3.7, 3.8, 3.9
        :Issues: `On github <https://github.com/cokelaer/biosniff/issues>`_
        
        
        This tools is a simple Sniffer for Biological formats (and some others)
        
        
        Installation
        ===============
        
        ::
        
            pip install biosniff
        
        Usage
        ======
        
        ::
        
            biosniff file.fasta
            biosniff example.vcf
            ...
        
        There are about 50 formats supported for now including: 
        
            abi, bam, bai, bcf, binary_bed, bed, bedgraph, bigwig, bigbed, bplink,
            bz2, cram, clustal, dsrc, embl,ena, fasta, fastq, genbank, gfa, gff2,
            gff3, gz, json, maf, newick, nexus, ods, paf, phylip, phyloxml, plink,
            qual, sam, scf, stockholm, rar, twobit, tsv, vcf, wiggle, wig, 
            xls, xlsx, xmfa, yaml, zip, 7zip, xz
        
        
        Changelog
        ~~~~~~~~~
        
        ========= ====================================================================
        Version   Description
        ========= ====================================================================
        0.2.0     * more tests (80% coverage) and some simplifications
        0.1.0     * first commit
        ========= ====================================================================
        
        
Keywords: NGS
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Description-Content-Type: text/x-rst
