Metadata-Version: 2.1
Name: napari-tissuumaps
Version: 0.1.0
Summary: A plugin to add compatibility with Tissuumaps
Home-page: https://github.com/wahlby-lab/napari-tissuumaps
Author: Nicolas Pielawski
Author-email: nicolas@pielawski.fr
License: MIT
Project-URL: Bug Tracker, https://github.com/wahlby-lab/napari-tissuumaps/issues
Project-URL: Documentation, https://github.com/wahlby-lab/napari-tissuumaps#README.md
Project-URL: Source Code, https://github.com/wahlby-lab/napari-tissuumaps
Project-URL: User Support, https://github.com/wahlby-lab/napari-tissuumaps/issues
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Framework :: napari
Classifier: Topic :: Software Development :: Testing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: MIT License
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE

# napari-tissuumaps

[![License](https://img.shields.io/pypi/l/napari-tissuumaps.svg?color=green)](https://github.com/npielawski/napari-tissuumaps/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-tissuumaps.svg?color=green)](https://pypi.org/project/napari-tissuumaps)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-tissuumaps.svg?color=green)](https://python.org)
[![tests](https://github.com/wahlby-lab/napari-tissuumaps/workflows/tests/badge.svg)](https://github.com/wahlby-lab/napari-tissuumaps/actions)
[![codecov](https://codecov.io/gh/wahlby-lab/napari-tissuumaps/branch/master/graph/badge.svg)](https://codecov.io/gh/wahlby-lab/napari-tissuumaps)

A plugin to add compatibility with Tissuumaps

----------------------------------

This plugins adds a new writer to Napari to export projects to [Tissumaps](https://tissuumaps.research.it.uu.se/).
Exported projects can than be open on the browser or on a standalone GUI with [FlaskTissumaps](https://github.com/wahlby-lab/FlaskTissUUmaps).

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## Installation

You can install `napari-tissuumaps` via [pip]:

    pip install napari-tissuumaps

You can also install `napari-tissumaps` via [napari]:

In Napari, access the menubar, Plugins > Install/Uninstall Plugins.
Search for napari-tissuumaps in the list and choose install, or type
`napari-tissuumaps` (without backticks) in the "install by name/url, or drop file..."
text area and choose install.

## Usage

To export a project for Tissuumaps, access the menubar, File > Save All Layers... and
choose a filename with a .tmap extension. It will create a folder containing all the
necessary files for Tissuumaps.

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,
"napari-tissuumaps" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/npielawski/napari-tissuumaps/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/


