.gitignore
.readthedocs.yml
LICENSE
MANIFEST.in
Makefile
README.md
setup.py
.github/workflows/publish.yml
.github/workflows/tests.yml
data/percolator.peptides.txt
data/percolator.psms.txt
data/phospho_rep1.pin
data/scope2_FP97AA.pin
data/scope2_FP97AB.pin
data/scope2_FP97AC.pin
docs/Makefile
docs/make.bat
docs/source/cli.rst
docs/source/conf.py
docs/source/index.rst
docs/source/_static/custom.css
docs/source/_static/mokapot_logo_light.png
docs/source/api/confidence.rst
docs/source/api/dataset.rst
docs/source/api/functions.rst
docs/source/api/index.rst
docs/source/api/model.rst
docs/source/vignettes/basic_python_api.ipynb
docs/source/vignettes/index.rst
docs/source/vignettes/joint_models.ipynb
docs/source/vignettes/percolator_comparison.ipynb
mokapot/__init__.py
mokapot/brew.py
mokapot/confidence.py
mokapot/config.py
mokapot/dataset.py
mokapot/model.py
mokapot/mokapot.py
mokapot/parsers.py
mokapot/qvalues.py
mokapot/utils.py
mokapot.egg-info/PKG-INFO
mokapot.egg-info/SOURCES.txt
mokapot.egg-info/dependency_links.txt
mokapot.egg-info/entry_points.txt
mokapot.egg-info/requires.txt
mokapot.egg-info/top_level.txt
static/mokapot_logo_dark.svg
tests/test_system.py